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The Ferric uptake regulator (Fur) proteins from Haemophilus influenzae and Escherichia coli overexpressed in E. coli cells (MC4100) grown in M9 medium supplemented with 57Fe were studied with Mössbauer spectroscopy. Previous studies have shown that Fur proteins from H. influenzae and E. coli bind a [2Fe-2S]2+ cluster in response to elevation of intracellular free iron content. Here we find that when the [2Fe-2S] 2+ clusters in purified Fur proteins are reduced with dithionite, the reduced clusters are quickly decomposed, forming compounds with two distinct spectral signatures of high spin Fe(II) in tetrahedral and octahedral coordination, respectively. The instability of the reduced [2Fe-2S]1+ cluster in Fur is unique, as the [2Fe-2S]2+ clusters in many other proteins can reversibly undergo one-electron reduction-oxidation. The Mössbauer spectra of whole E. coli cells overexpressing Fur proteins show a quadrupole doublet with the isomer shift of δ1 = 0.28 mm/s and ΔEQ1 = 0.52 mm/s, typical for oxidized [2Fe-2S]2+ clusters and identical with that in the purified Fur protein. The corresponding spectra in large applied magnetic fields show the diamagnetic pattern that unambiguously reveals an exchange-coupled system with a diamagnetic electronic ground state, which confirms its assignment to the oxidized [2Fe-2S]2+ cluster clusters from Fur. No reduced [2Fe-2S]1+ clusters of Fur are observed in the whole-cell E. coli spectra. The Mössbauer spectra of the whole-cell E. coli without the Fur expression do not contain the components associated with the [2Fe-2S]2+ cluster of Fur. 

57Fe nuclear resonance vibrational spectroscopy (NRVS) is used to study the tetranuclear iron clusters bearing a terminal Fe(iii)–O/OH moiety. The redox states of the three remote basal iron sites modulate the Fe(iii)–O/OH vibrational frequencies. 

Abstract Extremophile organisms are known that can metabolize at temperatures down to − 25 °C (psychrophiles) and up to 122 °C (hyperthermophiles). Understanding viability under extreme conditions is relevant for human health, biotechnological applications, and our search for life elsewhere in the universe. Information about the stability and dynamics of proteins under environmental extremes is an important factor in this regard. Here we compare the dynamics of small Fe-S proteins – rubredoxins – from psychrophilic and hyperthermophilic microorganisms, using three different nuclear techniques as well as molecular dynamics calculations to quantify motion at the Fe site. The theory of ‘corresponding states’ posits that homologous proteins from different extremophiles have comparable flexibilities at the optimum growth temperatures of their respective organisms. Although ‘corresponding states’ would predict greater flexibility for rubredoxins that operate at low temperatures, we find that from 4 to 300 K, the dynamics of the Fe sites in these homologous proteins are essentially equivalent. 

Thioredoxin reductases (TrxR) activate thioredoxins (Trx) that regulate the activity of diverse target proteins essential to prokaryotic and eukaryotic life. However, very little is understood of TrxR/Trx systems and redox control in methanogenic microbes from the domain Archaea (methanogens), for which genomes are abundant with annotations for ferredoxin:thioredoxin reductases [Fdx/thioredoxin reductase (FTR)] from group 4 of the widespread FTR-like family. Only two from the FTR-like family are characterized: the plant-type FTR from group 1 and FDR from group 6. Herein, the group 4 archetype (AFTR) from Methanosarcina acetivorans was characterized to advance understanding of the family and TrxR/Trx systems in methanogens. The modeled structure of AFTR, together with EPR and Mössbauer spectroscopies, supports a catalytic mechanism similar to plant-type FTR and FDR, albeit with important exceptions. EPR spectroscopy of reduced AFTR identified a transient [4Fe−4S]1+ cluster exhibiting a mixture of S = 7/2 and typical S = 1/2 signals, although rare for proteins containing [4Fe−4S] clusters, it is most likely the on-pathway intermediate in the disulfide reduction. Furthermore, an active site histidine equivalent to residues essential for the activity of plant-type FTR and FDR was found dispensable for AFTR. Finally, a unique thioredoxin system was reconstituted from AFTR, ferredoxin, and Trx2 from M. acetivorans, for which specialized target proteins were identified that are essential for growth and other diverse metabolisms. 

The photophysical properties of naturally occurring chlorophylls depend on the regioisomeric nature of the β-pyrrolic substituents. Such systems are the “gold standard” by which such effects are judged. However, simple extrapolations from what has been learned with chlorophylls may not be appropriate for other partially reduced porphyrinoids. Here we report the synthesis of a series of cis / trans -porphodilactones ( cis / trans -1) and related derivatives ( cis / trans 2–5) designed to probe the effect of regioisomeric substitution in porphyrinoids that incorporate degrees of unsaturation through the β-pyrrolic periphery that exceed those of chlorophyll. These test systems were obtained through β-pyrrolic modifications of the tetrapyrrolic core, which included reduction of β-diazalone to the corresponding dilactol moieties and 1,3-dipolar cycloadditions. In the case of cis - vs. trans -3 bearing two pyrrolidine-fused β-rings we found an unprecedented Δ Q L up to ca. 71 nm (2086 cm −1 ), where Δ Q L ( Q L means the lowest energy transfer band, also the S 0 → S 1 transition band, which is often assigned as Q y (0,0) band) refers to the transition energy difference between the corresponding cis / trans -isomers. The Δ Q L values for these and other systems reported here were found to depend on the differences in the HOMO–LUMO energy gap and to be tied to the degeneracy and energy level splitting of the FMOs, as inferred from a combination of MCD spectral studies and DFT calculations. The aromaticity, estimated from the chemical shifts of the N–H protons and supported by theoretical calculations ( e.g. , AICD plots and NICS(1) values), was found to correlate with the extent of porphyrin periphery saturation resulting from the specific β-modifications. The aromaticity proved inversely proportional to the degree to which the regioisomerism affected the photophysical properties as noted from plots of Δ Q L s in cm −1 vs. the average NICS(1) values for 1–5. Such a finding is not something that can be easily interpolated from prior work and thus reveals how aromaticity may be used to fine-tune photophysical effects in reduced porphyrinoids.